City Station is the central area in of Downtown. There are a KND S.C.A.M.P.E.R. and a Monkey Skyway Agent connecting almost all sections of the Downtown area except for Bravo Beach and Townsville Park. In this area there are Ramma Jamma, Mandroid M-99, Dexbot Q-12, and TOM. A short walk over the rails will take the player to where Ben, Gwen, Kevin, Grandpa Max, Paradox, and Azmuth can be found inside Ship, located near a bus station.
On September 14, 2011, TOM arrived at City Station, along with his Clydes. Furthermore, on this day Grandpa Max was placed in Ship's interior, where he gave out the Rath Nano Mission.